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    Actin binding Calponin homology (CH) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834901, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Actin binding Calponin homology (CH) domain-containing protein
    Primary source
    TAIR:AT5G48460
    Locus tag
    AT5G48460
    See related
    Araport:AT5G48460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    14
    Sequence:
    Chromosome: 5; NC_003076.8 (19636045..19639529, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene FAD-dependent oxidoreductase family protein Neighboring gene ncRNA Neighboring gene SKU5 similar 3 Neighboring gene tRNA-Lys Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Structurally Plastic CH2 Domain Is Linked to Distinct Functions of Fimbrins/Plastins. Zhang R, et al. J Biol Chem, 2016 Aug 19. PMID 27261463, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_124221.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within actin filament bundle assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Actin binding Calponin homology (CH) domain-containing protein
    NP_199657.1
    • Actin binding Calponin homology (CH) domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin-like protein 2 (TAIR:AT5G35700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19636045..19639529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124221.3 → NP_199657.1  Actin binding Calponin homology (CH) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199657.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49971, O50064, Q67XH3
      UniProtKB/TrEMBL
      A0A5S9YC58, A0A654G939, A0A7G2FGP0
      Conserved Domains (1) summary
      COG5069
      Location:53 → 619
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O50064.1

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