U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    EXO84B exocyst complex component 84B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835046, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EXO84B
    Official Full Name
    exocyst complex component 84B
    Primary source
    TAIR:AT5G49830
    Locus tag
    AT5G49830
    See related
    Araport:AT5G49830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    exocyst complex component 84B; K21G20.4; K21G20_4
    Summary
    Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EXO84B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (20250419..20255089, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene methionine S-methyltransferase Neighboring gene root UVB sensitive protein (Protein of unknown function, DUF647) Neighboring gene ATP-dependent Clp protease Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene Mannose-binding lectin superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Arabidopsis exocyst complex is involved in cytokinesis and cell plate maturation. Fendrych M, et al. Plant Cell, 2010 Sep. PMID 20870962, Free PMC Article
    2. A Framework for Lateral Membrane Trafficking and Polar Tethering of the PEN3 ATP-Binding Cassette Transporter. Mao H, et al. Plant Physiol, 2016 Dec. PMID 27803190, Free PMC Article
    3. Arabidopsis exocyst subcomplex containing subunit EXO70B1 is involved in autophagy-related transport to the vacuole. Kulich I, et al. Traffic, 2013 Nov. PMID 23944713
    4. An exocyst complex functions in plant cell growth in Arabidopsis and tobacco. Hála M, et al. Plant Cell, 2008 May. PMID 18492870, Free PMC Article
    5. BYPASS1-LIKE regulates lateral root initiation via exocytic vesicular trafficking-mediated PIN recycling in Arabidopsis. Yang G, et al. J Integr Plant Biol, 2022 May. PMID 35249253

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001161299.1
    NM_001161300.1
    NM_124361.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi to plasma membrane transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within acceptance of pollen IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein localization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of exocyst IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    exocyst complex component 84B
    NP_001154771.1
    • exocyst complex component 84B (EXO84B); LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: Vps51/Vps67 family (components of vesicular transport) protein (TAIR:AT1G10385.1); Has 361 Blast hits to 284 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 56; Plants - 154; Viruses - 2; Other Eukaryotes - 7 (source: NCBI BLink).
    NP_001154772.1
    • exocyst complex component 84B (EXO84B); LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: Vps51/Vps67 family (components of vesicular transport) protein (TAIR:AT1G10385.1); Has 307 Blast hits to 283 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 55; Plants - 127; Viruses - 2; Other Eukaryotes - 7 (source: NCBI BLink).
    NP_199794.1
    • exocyst complex component 84B (EXO84B); LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: Vps51/Vps67 family (components of vesicular transport) protein (TAIR:AT1G10385.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20250419..20255089 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124361.5 → NP_199794.1  exocyst complex component 84B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199794.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LTB0
      UniProtKB/TrEMBL
      A0A5S9YCK6
      Conserved Domains (2) summary
      pfam08700
      Location:27 → 106
      Vps51; Vps51/Vps67
      pfam16528
      Location:142 → 350
      Exo84_C; Exocyst component 84 C-terminal

    2. NM_001161300.1 → NP_001154772.1  exocyst complex component 84B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154772.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YCK6, F4K7F4
      Conserved Domains (2) summary
      pfam08700
      Location:27 → 137
      Vps51; Vps51/Vps67
      pfam16528
      Location:173 → 381
      Exo84_C; Exocyst component 84 C-terminal

    3. NM_001161299.1 → NP_001154771.1  exocyst complex component 84B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154771.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YCK6, F4K7F5
      Conserved Domains (2) summary
      pfam08700
      Location:110 → 168
      Vps51; Vps51/Vps67
      pfam16528
      Location:204 → 412
      Exo84_C; Exocyst component 84 C-terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LTB0.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.