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    ECT10 evolutionarily conserved C-terminal region 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835931, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ECT10
    Official Full Name
    evolutionarily conserved C-terminal region 10
    Primary source
    TAIR:AT5G58190
    Locus tag
    AT5G58190
    See related
    Araport:AT5G58190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    evolutionarily conserved C-terminal region 10; MCK7.6; MCK7_6
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    Genomic context

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    See ECT10 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (23546329..23549605)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SHV3-like 5 Neighboring gene Synaptobrevin family protein Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene transthyretin-like protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene FRAGILE HISTIDINE TRIAD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_125204.3
    NM_203225.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    evolutionarily conserved C-terminal region 10
    NP_200627.2
    • evolutionarily conserved C-terminal region 10 (ECT10); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 5 (TAIR:AT3G13060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974954.1
    • evolutionarily conserved C-terminal region 10 (ECT10); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 5 (TAIR:AT3G13060.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23546329..23549605
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125204.3 → NP_200627.2  evolutionarily conserved C-terminal region 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200627.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YHG8, A0A654GCM6, Q8VYH3
      Conserved Domains (1) summary
      pfam04146
      Location:324 → 462
      YTH; YT521-B-like domain

    2. NM_203225.1 → NP_974954.1  evolutionarily conserved C-terminal region 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974954.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GCM6, F4KDJ9
      Conserved Domains (1) summary
      pfam04146
      Location:325 → 463
      YTH; YT521-B-like domain
    Nucleotide Protein
    Heading Accession and Version

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