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    IRE AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836352, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IRE
    Official Full Name
    AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
    Primary source
    TAIR:AT5G62310
    Locus tag
    AT5G62310
    See related
    Araport:AT5G62310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    INCOMPLETE ROOT HAIR ELONGATION; MMI9.15; MMI9_15
    Summary
    Encodes a protein with a serine/threonine kinase domain. There are two other closely related members in Arabidopsis. Knock-out mutation results in incomplete root hair elongation. Expression is found all organs examined but is especially strong in elongating root hairs.
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    Genomic context

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    See IRE in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    17
    Sequence:
    Chromosome: 5; NC_003076.8 (25023155..25028686)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nucleotide-sensitive chloride conductance regulator (ICln) family protein Neighboring gene Ribosomal protein S10p/S20e family protein Neighboring gene myb domain protein 99 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The IRE gene encodes a protein kinase homologue and modulates root hair growth in Arabidopsis. Oyama T, et al. Plant J, 2002 May. PMID 12000677
    2. An IRE-like AGC kinase gene, MtIRE, has unique expression in the invasion zone of developing root nodules in Medicago truncatula. Pislariu CI, et al. Plant Physiol, 2007 Jun. PMID 17237187, Free PMC Article
    3. Growth signalling pathways in Arabidopsis and the AGC protein kinases. Bögre L, et al. Trends Plant Sci, 2003 Sep. PMID 13678909
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within phosphorylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    acts_upstream_of_or_within unidimensional cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
    NP_201037.1
    • INCOMPLETE ROOT HAIR ELONGATION (IRE); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G17850.1); Has 126848 Blast hits to 125224 proteins in 4803 species: Archae - 165; Bacteria - 15038; Metazoa - 47504; Fungi - 12892; Plants - 29759; Viruses - 507; Other Eukaryotes - 20983 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25023155..25028686
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125625.3 → NP_201037.1  AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201037.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LE81
      UniProtKB/TrEMBL
      A0A178UJB1, A0A5S9YGZ5
      Conserved Domains (1) summary
      cd05579
      Location:760 → 1048
      STKc_MAST_like; Catalytic domain of Microtubule-associated serine/threonine (MAST) kinase-like proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LE81.1

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