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    EMB3144 AAA-type ATPase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836579, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB3144
    Official Full Name
    AAA-type ATPase family protein
    Primary source
    TAIR:AT5G64580
    Locus tag
    AT5G64580
    See related
    Araport:AT5G64580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 3144; MUB3.10; MUB3_10
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    Genomic context

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    See EMB3144 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    17
    Sequence:
    Chromosome: 5; NC_003076.8 (25816918..25821567, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene magnesium transporter 9 Neighboring gene ncRNA Neighboring gene beta-D-xylosidase 4 Neighboring gene NYN domain protein Neighboring gene O-fucosyltransferase family protein Neighboring gene histone acetyltransferase of the MYST family 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FtsHi4 is essential for embryogenesis due to its influence on chloroplast development in Arabidopsis. Lu X, et al. PLoS One, 2014. PMID 24964212, Free PMC Article
    2. Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm. Mutwil M, et al. Plant Physiol, 2010 Jan. PMID 19889879, Free PMC Article
    3. A Ycf2-FtsHi Heteromeric AAA-ATPase Complex Is Required for Chloroplast Protein Import. Kikuchi S, et al. Plant Cell, 2018 Nov. PMID 30309901, Free PMC Article
    4. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. FtsHi4 localized in chloroplasts as a thylakoid membrane-associated protein and is essential for chloroplast development in Arabdiopsis.
      Title: FtsHi4 is essential for embryogenesis due to its influence on chloroplast development in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_125854.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables chloroplast protein-transporting ATPase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein import into chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Ycf2/FtsHi complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast inner membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    AAA-type ATPase family protein
    NP_201263.2
    • AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, metalloendopeptidase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 43409 Blast hits to 41131 proteins in 3311 species: Archae - 1622; Bacteria - 19384; Metazoa - 4934; Fungi - 3903; Plants - 3224; Viruses - 61; Other Eukaryotes - 10281 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25816918..25821567 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125854.4 → NP_201263.2  AAA-type ATPase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201263.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KF14, Q8RXW9, Q9FLG0
      UniProtKB/TrEMBL
      A0A5S9YJ48, A0A654GE05
      Conserved Domains (1) summary
      TIGR01241
      Location:296 → 751
      FtsH_fam; ATP-dependent metalloprotease FtsH
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4KF14.1

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