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    IAA18 indole-3-acetic acid inducible 18 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841623, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IAA18
    Official Full Name
    indole-3-acetic acid inducible 18
    Primary source
    TAIR:AT1G51950
    Locus tag
    AT1G51950
    See related
    Araport:AT1G51950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    indole-3-acetic acid inducible 18; T14L22.14; T14L22_14
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    Genomic context

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    See IAA18 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (19305081..19307518)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene protein kinase family protein / peptidoglycan-binding LysM domain-containing protein Neighboring gene ncRNA Neighboring gene IQ-domain 27 Neighboring gene ABA Overly-Sensitive 5 Neighboring gene B3 domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A gain-of-function mutation in IAA18 alters Arabidopsis embryonic apical patterning. Ploense SE, et al. Development, 2009 May. PMID 19363152, Free PMC Article
    2. Domain II mutations in CRANE/IAA18 suppress lateral root formation and affect shoot development in Arabidopsis thaliana. Uehara T, et al. Plant Cell Physiol, 2008 Jul. PMID 18505759
    3. A secreted peptide acts on BIN2-mediated phosphorylation of ARFs to potentiate auxin response during lateral root development. Cho H, et al. Nat Cell Biol, 2014 Jan. PMID 24362628
    4. Protein-protein interactions among the Aux/IAA proteins. Kim J, et al. Proc Natl Acad Sci U S A, 1997 Oct 28. PMID 9342315, Free PMC Article
    5. Large-scale protein-protein interaction analysis in Arabidopsis mesophyll protoplasts by split firefly luciferase complementation. Li JF, et al. PLoS One, 2011. PMID 22096563, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104076.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to auxin TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    indole-3-acetic acid inducible 18
    NP_175607.1
    • indole-3-acetic acid inducible 18 (IAA18); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: phytochrome-associated protein 1 (TAIR:AT3G16500.1); Has 1911 Blast hits to 1901 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1911; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19305081..19307518
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104076.4 → NP_175607.1  indole-3-acetic acid inducible 18 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175607.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O24408, Q8L9I9
      UniProtKB/TrEMBL
      A0A178WNZ9, A0A5S9WL10, Q2VWA3
      Conserved Domains (1) summary
      pfam02309
      Location:41 → 250
      AUX_IAA; AUX/IAA family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O24408.2

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