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    FRS10 FAR1-related sequence 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832948, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FRS10
    Official Full Name
    FAR1-related sequence 10
    Primary source
    TAIR:AT5G28530
    Locus tag
    AT5G28530
    See related
    Araport:AT5G28530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FAR1-related sequence 10; T26D3.9; T26D3_9
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    Genomic context

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    See FRS10 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (10524411..10527566, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene pseudo Neighboring gene heat shock protein 70 (Hsp 70) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_122736.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    FAR1-related sequence 10
    NP_198205.2
    • FAR1-related sequence 10 (FRS10); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 11 (TAIR:AT1G10240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      10524411..10527566 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344073.1 → NP_001331636.1  FAR1-related sequence 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEG3, A0A5S9Y8B7, A0A654G4V0
      Conserved Domains (1) summary
      PLN03097
      Location:41 → 622
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

    2. NM_001344074.1 → NP_001331633.1  FAR1-related sequence 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEG3, A0A5S9Y8B7, A0A654G4V0
      Conserved Domains (1) summary
      PLN03097
      Location:41 → 622
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

    3. NM_001344076.1 → NP_001331635.1  FAR1-related sequence 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEH0, A0A654G4V0

    4. NM_001344075.1 → NP_001331634.1  FAR1-related sequence 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEH3, A0A654G4V0

    5. NM_122736.2 → NP_198205.2  FAR1-related sequence 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198205.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LKR4
      UniProtKB/TrEMBL
      A0A654G4V0
      Conserved Domains (4) summary
      PLN03097
      Location:41 → 626
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam04434
      Location:568 → 603
      SWIM; SWIM zinc finger
      pfam03101
      Location:70 → 160
      FAR1; FAR1 DNA-binding domain
      pfam10551
      Location:297 → 387
      MULE; MULE transposase domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LKR4.2

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