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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001359203.2 → NP_001346132.1 COP9 signalosome complex subunit 4 isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (b) is shorter at the N-terminus compared to isoform a.
- Source sequence(s)
-
AC109196
- UniProtKB/TrEMBL
-
Q3TIJ1
- Conserved Domains (3) summary
-
- COG5071
Location:20 → 326
- RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
- pfam18420
Location:314 → 355
- CSN4_RPN5_eIF3a; CSN4/RPN5/eIF3a helix turn helix domain
- pfam01399
Location:213 → 311
- PCI; PCI domain
-
NM_001359204.2 → NP_001346133.1 COP9 signalosome complex subunit 4 isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (b) is shorter at the N-terminus compared to isoform a.
- Source sequence(s)
-
AC109196
- UniProtKB/TrEMBL
-
Q3TIJ1
- Conserved Domains (3) summary
-
- COG5071
Location:20 → 326
- RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
- pfam18420
Location:314 → 355
- CSN4_RPN5_eIF3a; CSN4/RPN5/eIF3a helix turn helix domain
- pfam01399
Location:213 → 311
- PCI; PCI domain
-
NM_001425473.1 → NP_001412402.1 COP9 signalosome complex subunit 4 isoform c
Status: VALIDATED
- Source sequence(s)
-
AC109196
- UniProtKB/TrEMBL
-
Q3TIJ1
-
NM_001425474.1 → NP_001412403.1 COP9 signalosome complex subunit 4 isoform d
Status: VALIDATED
- Source sequence(s)
-
AC109196
- UniProtKB/TrEMBL
-
Q3TIJ1
-
NM_012001.3 → NP_036131.1 COP9 signalosome complex subunit 4 isoform a
See identical proteins and their annotated locations for NP_036131.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a).
- Source sequence(s)
-
AC109196
- Consensus CDS
-
CCDS19463.1
- UniProtKB/Swiss-Prot
-
O88544
- UniProtKB/TrEMBL
- Q14AI7, Q3TIJ1
- Related
- ENSMUSP00000048416.9, ENSMUST00000045993.15
- Conserved Domains (3) summary
-
- COG5071
Location:71 → 377
- RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
- pfam18420
Location:365 → 406
- CSN4_RPN5_eIF3a; CSN4/RPN5/eIF3a helix turn helix domain
- pfam01399
Location:264 → 362
- PCI; PCI domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000071.7 Reference GRCm39 C57BL/6J
- Range
-
100666223..100695668
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036165149.1 → XP_036021042.1 COP9 signalosome complex subunit 4 isoform X3
- UniProtKB/TrEMBL
-
D3YV99
- Related
- ENSMUSP00000114585.2, ENSMUST00000151414.8
- Conserved Domains (2) summary
-
- COG5071
Location:20 → 170
- RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
- pfam18420
Location:247 → 288
- CSN4_RPN5_eIF3a; CSN4/RPN5/eIF3a helix turn helix domain
-
XM_006534953.4 → XP_006535016.1 COP9 signalosome complex subunit 4 isoform X1
See identical proteins and their annotated locations for XP_006535016.1
- UniProtKB/TrEMBL
-
Q3TIJ1
- Conserved Domains (3) summary
-
- COG5071
Location:20 → 326
- RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
- pfam18420
Location:314 → 355
- CSN4_RPN5_eIF3a; CSN4/RPN5/eIF3a helix turn helix domain
- pfam01399
Location:213 → 311
- PCI; PCI domain
-
XM_036165147.1 → XP_036021040.1 COP9 signalosome complex subunit 4 isoform X1
- UniProtKB/TrEMBL
-
Q3TIJ1
- Conserved Domains (3) summary
-
- COG5071
Location:20 → 326
- RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
- pfam18420
Location:314 → 355
- CSN4_RPN5_eIF3a; CSN4/RPN5/eIF3a helix turn helix domain
- pfam01399
Location:213 → 311
- PCI; PCI domain