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    DNA binding / DNA-directed RNA polymerase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820607, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA binding / DNA-directed RNA polymerase
    Primary source
    TAIR:AT3G13940
    Locus tag
    AT3G13940
    See related
    Araport:AT3G13940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (4600422..4602582, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein Neighboring gene hypothetical protein (DUF3511) Neighboring gene eukaryotic translation initiation factor 4A1 Neighboring gene ncRNA Neighboring gene Dihydrolipoamide acetyltransferase, long form protein Neighboring gene ankyrin Neighboring gene growth-regulating factor 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_112248.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA binding / DNA-directed RNA polymerase
    NP_188010.1
    • DNA binding;DNA-directed RNA polymerases; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase I associated factor, A49-like (InterPro:IPR009668); Has 222 Blast hits to 222 proteins in 107 species: Archae - 0; Bacteria - 2; Metazoa - 66; Fungi - 105; Plants - 33; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4600422..4602582 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112248.4 → NP_188010.1  DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188010.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VL99, A0A7G2EPU5, Q9LVK6
      Conserved Domains (1) summary
      pfam06870
      Location:89 → 439
      RNA_pol_I_A49; A49-like RNA polymerase I associated factor
    Nucleotide Protein
    Heading Accession and Version

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