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    PRD3 putative recombination initiation defects 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839243, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PRD3
    Official Full Name
    putative recombination initiation defects 3
    Primary source
    TAIR:AT1G01690
    Locus tag
    AT1G01690
    See related
    Araport:AT1G01690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3; ATPRD3; putative recombination initiation defects 3; T1N6.6; T1N6_6
    Summary
    Encodes a novel plant-specific protein that is involved in meiotic double strand break formation.
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    Genomic context

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    See PRD3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (249041..252522)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene plant U-box 54 Neighboring gene Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein Neighboring gene miscRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A high throughput genetic screen identifies new early meiotic recombination functions in Arabidopsis thaliana. De Muyt A, et al. PLoS Genet, 2009 Sep. PMID 19763177, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001331291.1
    NM_001331293.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chiasma assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in chromosome organization involved in meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within embryo sac development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within meiotic DNA double-strand break formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in plant-type sporogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    putative recombination initiation defects 3
    NP_001318904.1
    • putative recombination initiation defects 3 (PRD3); Has 279 Blast hits to 273 proteins in 87 species: Archae - 2; Bacteria - 106; Metazoa - 105; Fungi - 5; Plants - 32; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      249041..252522
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331292.1 → NP_001322648.1  putative recombination initiation defects 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178WD31, A0A1P8AUM4, Q0WWX5, Q9LQ91
      UniProtKB/TrEMBL
      A0A178WB09, A0A384LK19

    2. NM_001331291.1 → NP_001318904.1  putative recombination initiation defects 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178WD31, A0A1P8AUM4, Q0WWX5, Q9LQ91
      UniProtKB/TrEMBL
      A0A178WB09, A0A178WE16, F4HU48

    3. NM_001331293.1 → NP_001322649.1  putative recombination initiation defects 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178WD31, A0A1P8AUM4, Q0WWX5, Q9LQ91
      UniProtKB/TrEMBL
      A0A178WB09, A0A1P8AUL3
    Nucleotide Protein
    Heading Accession and Version

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