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    PUP16 purine permease 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837518, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PUP16
    Official Full Name
    purine permease 16
    Primary source
    TAIR:AT1G09860
    Locus tag
    AT1G09860
    See related
    Araport:AT1G09860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATPUP16; F21M12.25; F21M12_25; purine permease 16
    Summary
    Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.
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    Genomic context

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    See PUP16 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (3204016..3205411, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene shaggy-like protein kinase 41 Neighboring gene ncRNA Neighboring gene xylem bark cysteine peptidase 3 Neighboring gene ncRNA Neighboring gene histidine acid phosphatase family protein Neighboring gene Rhamnogalacturonate lyase family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new family of high-affinity transporters for adenine, cytosine, and purine derivatives in Arabidopsis. Gillissen B, et al. Plant Cell, 2000 Feb. PMID 10662864, Free PMC Article
    2. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_100860.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables purine nucleobase transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables purine nucleobase transmembrane transporter activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables purine nucleoside transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within purine nucleobase transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    purine permease 16
    NP_172457.1
    • purine permease 16 (PUP16); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease 17 (TAIR:AT1G57943.1); Has 330 Blast hits to 323 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 326; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3204016..3205411 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100860.3 → NP_172457.1  purine permease 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172457.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04508
      UniProtKB/TrEMBL
      A0A178W6F0, A0A5S9TL20
      Conserved Domains (1) summary
      pfam16913
      Location:30 → 368
      PUNUT; Purine nucleobase transmembrane transport
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04508.1

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