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    PLC-like phosphodiesterases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829644, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PLC-like phosphodiesterases superfamily protein
    Primary source
    TAIR:AT4G34920
    Locus tag
    AT4G34920
    See related
    Araport:AT4G34920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11I11.160; F11I11_160
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (16635504..16636983)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene xanthine dehydrogenase 2 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene PLC-like phosphodiesterases superfamily protein Neighboring gene armadillo repeat only 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_119658.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphoric diester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    PLC-like phosphodiesterases superfamily protein
    NP_195218.1
    • PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: triglyceride biosynthetic process, intracellular signaling pathway, lipid metabolic process, phospholipid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific, X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT4G34930.1); Has 709 Blast hits to 707 proteins in 190 species: Archae - 0; Bacteria - 444; Metazoa - 112; Fungi - 67; Plants - 54; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16635504..16636983
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119658.3 → NP_195218.1  PLC-like phosphodiesterases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195218.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYQ8, Q8S9L7, Q9SW43
      Conserved Domains (1) summary
      cl14615
      Location:33 → 313
      PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
    Nucleotide Protein
    Heading Accession and Version

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