U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PAP16 purple acid phosphatase 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820178, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PAP16
    Official Full Name
    purple acid phosphatase 16
    Primary source
    TAIR:AT3G10150
    Locus tag
    AT3G10150
    See related
    Araport:AT3G10150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATPAP16; purple acid phosphatase 16
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PAP16 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (3137362..3139169, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SOUL heme-binding family protein Neighboring gene uncharacterized protein Neighboring gene RECA homolog 3 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DHFS-FPGS homolog C Neighboring gene Gibberellin-regulated family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Expression patterns of purple acid phosphatase genes in Arabidopsis organs and functional analysis of AtPAP23 predominantly transcribed in flower. Zhu H, et al. Plant Mol Biol, 2005 Nov. PMID 16244908
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001337859.1
    NM_111850.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables acid phosphatase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    purple acid phosphatase 16
    NP_187626.1
    • purple acid phosphatase 16 (PAP16); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Phosphoesterase At2g46880 (InterPro:IPR011230); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 28 (TAIR:AT5G57140.1); Has 563 Blast hits to 562 proteins in 197 species: Archae - 0; Bacteria - 224; Metazoa - 0; Fungi - 196; Plants - 110; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3137362..3139169 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111850.4 → NP_187626.1  purple acid phosphatase 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187626.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6DBI6, Q6GWE0, Q9SR79
      UniProtKB/TrEMBL
      A0A178VB90, A0A5S9XAT3
      Conserved Domains (1) summary
      cd07383
      Location:33 → 329
      MPP_Dcr2; Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain

    2. NM_001337859.1 → NP_001326965.1  purple acid phosphatase 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQV7, A0A5S9XAT3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SR79.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.