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    pre-rRNA-processing ESF1-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820504, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pre-rRNA-processing ESF1-like protein
    Primary source
    TAIR:AT3G01160
    Locus tag
    AT3G01160
    See related
    Araport:AT3G01160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T4P13.15; T4P13_15
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (54524..57541, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene myb domain protein 106 Neighboring gene ncRNA Neighboring gene polypyrimidine tract-binding protein 1 Neighboring gene Ribosomal protein L34e superfamily protein Neighboring gene uncharacterized protein Neighboring gene starch synthase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_110981.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pre-rRNA-processing ESF1-like protein
    NP_566132.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUC153 (InterPro:IPR012580); Has 36638 Blast hits to 21323 proteins in 1057 species: Archae - 109; Bacteria - 2369; Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other Eukaryotes - 13360 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      54524..57541 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_110981.3 → NP_566132.2  pre-rRNA-processing ESF1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566132.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FDI6, Q9MAC6
      Conserved Domains (2) summary
      COG5638
      Location:33 → 677
      COG5638; Uncharacterized conserved protein [Function unknown]
      pfam08159
      Location:600 → 623
      NUC153; NUC153 domain
    Nucleotide Protein
    Heading Accession and Version

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