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    CID4 CTC-interacting domain 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820615, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CID4
    Official Full Name
    CTC-interacting domain 4
    Primary source
    TAIR:AT3G14010
    Locus tag
    AT3G14010
    See related
    Araport:AT3G14010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CTC-interacting domain 4
    Summary
    hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2.
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    Genomic context

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    See CID4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Sequence:
    Chromosome: 3; NC_003074.8 (4636063..4641149)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene dentin sialophosphoprotein, putative (DUF1296) Neighboring gene DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein Neighboring gene ncRNA Neighboring gene nuclear factor Y, subunit A6 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ATXN2 Orthologs CID3 and CID4, Act Redundantly to In-Fluence Developmental Pathways throughout the Life Cycle of Arabidopsis thaliana. López-Juárez ZM, et al. Int J Mol Sci, 2021 Mar 17. PMID 33802796, Free PMC Article
    2. Four distinct classes of proteins as interaction partners of the PABC domain of Arabidopsis thaliana Poly(A)-binding proteins. Bravo J, et al. Mol Genet Genomics, 2005 Feb. PMID 15650869
    3. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The ATXN2 Orthologs CID3 and CID4, Act Redundantly to In-Fluence Developmental Pathways throughout the Life Cycle of Arabidopsis thaliana.
      Title: The ATXN2 Orthologs CID3 and CID4, Act Redundantly to In-Fluence Developmental Pathways throughout the Life Cycle of Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084681.1
    NM_001084682.1
    NM_001202957.1
    NM_001338097.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CTC-interacting domain 4
    NP_001078150.1
    • CTC-interacting domain 4 (CID4); FUNCTIONS IN: protein binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 (TAIR:AT1G54170.1); Has 13147 Blast hits to 6513 proteins in 670 species: Archae - 9; Bacteria - 1458; Metazoa - 3492; Fungi - 1697; Plants - 664; Viruses - 94; Other Eukaryotes - 5733 (source: NCBI BLink).
    NP_001078151.1
    • CTC-interacting domain 4 (CID4); FUNCTIONS IN: protein binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 (TAIR:AT1G54170.1); Has 13157 Blast hits to 6515 proteins in 672 species: Archae - 9; Bacteria - 1467; Metazoa - 3492; Fungi - 1698; Plants - 664; Viruses - 94; Other Eukaryotes - 5733 (source: NCBI BLink).
    NP_001189886.1
    • CTC-interacting domain 4 (CID4); FUNCTIONS IN: protein binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 (TAIR:AT1G54170.1).
    NP_566471.1
    • CTC-interacting domain 4 (CID4); CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 (TAIR:AT1G54170.1); Has 13166 Blast hits to 6516 proteins in 672 species: Archae - 9; Bacteria - 1476; Metazoa - 3492; Fungi - 1698; Plants - 664; Viruses - 94; Other Eukaryotes - 5733 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4636063..4641149
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112255.4 → NP_566471.1  CTC-interacting domain 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566471.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AM9, Q9LVJ8
      UniProtKB/TrEMBL
      A0A654FH16
      Conserved Domains (3) summary
      COG5180
      Location:129 → 549
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:206 → 270
      LsmAD; LsmAD domain
      pfam14438
      Location:47 → 126
      SM-ATX; Ataxin 2 SM domain

    2. NM_001202957.1 → NP_001189886.1  CTC-interacting domain 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189886.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FH16, F4JEN1
      Conserved Domains (3) summary
      COG5180
      Location:129 → 547
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:206 → 270
      LsmAD; LsmAD domain
      pfam14438
      Location:47 → 126
      SM-ATX; Ataxin 2 SM domain

    3. NM_001338097.1 → NP_001325470.1  CTC-interacting domain 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLC0, A0A5S9XCG8

    4. NM_001084681.1 → NP_001078150.1  CTC-interacting domain 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078150.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AM9, Q9LVJ8
      UniProtKB/TrEMBL
      A0A654FH16
      Conserved Domains (3) summary
      COG5180
      Location:129 → 549
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:206 → 270
      LsmAD; LsmAD domain
      pfam14438
      Location:47 → 126
      SM-ATX; Ataxin 2 SM domain

    5. NM_001084682.1 → NP_001078151.1  CTC-interacting domain 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078151.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AM9, Q9LVJ8
      UniProtKB/TrEMBL
      A0A654FH16
      Conserved Domains (3) summary
      COG5180
      Location:129 → 549
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:206 → 270
      LsmAD; LsmAD domain
      pfam14438
      Location:47 → 126
      SM-ATX; Ataxin 2 SM domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94AM9.1

    Gene LinkOut

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