U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    HAD superfamily, subfamily IIIB acid phosphatase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818442, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    HAD superfamily, subfamily IIIB acid phosphatase
    Primary source
    TAIR:AT2G38600
    Locus tag
    AT2G38600
    See related
    Araport:AT2G38600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6A23.20; T6A23_20
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (16145630..16147144)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Mitochondrial ATP synthase D chain-related protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ncRNA Neighboring gene RNA-binding KH domain-containing protein Neighboring gene cyclin-dependent kinase B1;2 Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene LURP-one-like protein (DUF567)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables acid phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within dephosphorylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    HAD superfamily, subfamily IIIB acid phosphatase
    NP_001318373.1
    • HAD superfamily, subfamily IIIB acid phosphatase; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29260.1); Has 709 Blast hits to 704 proteins in 163 species: Archae - 0; Bacteria - 272; Metazoa - 0; Fungi - 0; Plants - 374; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16145630..16147144
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129417.2 → NP_181394.1  HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181394.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNB4, A0A5S9X594, Q9ZVI2
      Conserved Domains (1) summary
      TIGR01675
      Location:23 → 251
      plant-AP; plant acid phosphatase

    2. NM_001336709.1 → NP_001318373.1  HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNB4, A0A5S9X594, Q9ZVI2
      Conserved Domains (1) summary
      TIGR01675
      Location:23 → 251
      plant-AP; plant acid phosphatase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools