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    E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843549, updated on 18-Sep-2024

    Summary

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    Official Full Name
    E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232)
    Primary source
    TAIR:AT1G72175
    Locus tag
    AT1G72175
    See related
    Araport:AT1G72175
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (27157875..27159735)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene MICOS complex subunit, putative (DUF543) Neighboring gene Leucine-rich receptor-like protein kinase family protein Neighboring gene D-isomer specific 2-hydroxyacid dehydrogenase family protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001334517.1
    NM_105876.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232)
    NP_565037.1
    • FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with domain of unknown function (DUF 1232) (TAIR:AT1G22510.1); Has 671 Blast hits to 671 proteins in 108 species: Archae - 0; Bacteria - 8; Metazoa - 504; Fungi - 36; Plants - 67; Viruses - 2; Other Eukaryotes - 54 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27157875..27159735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105876.4 → NP_565037.1  E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565037.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9L9, Q93WJ5
      Conserved Domains (3) summary
      cd00162
      Location:10 → 52
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      pfam06803
      Location:130 → 155
      DUF1232; Protein of unknown function (DUF1232)
      cl17238
      Location:10 → 53
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. NM_001334517.1 → NP_001323299.1  E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWL5
    Nucleotide Protein
    Heading Accession and Version

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