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    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833461, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
    Primary source
    TAIR:AT5G35100
    Locus tag
    AT5G35100
    See related
    Araport:AT5G35100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7N22.3; F7N22_3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (13359502..13361905, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ER lectin-like protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The immunophilin CYCLOPHILIN28 affects PSII-LHCII supercomplex assembly and accumulation in Arabidopsis thaliana. Zhu W, et al. J Integr Plant Biol, 2022 Apr. PMID 35199452
    2. Proteome map of the chloroplast lumen of Arabidopsis thaliana. Schubert M, et al. J Biol Chem, 2002 Mar 8. PMID 11719511
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001085167.1
    NM_001344094.1
    NM_122901.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within photosystem II assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein peptidyl-prolyl isomerization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 
    is_active_in plastid thylakoid lumen IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in thylakoid lumen HDA PubMed 

    General protein information

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    Preferred Names
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
    NP_001078636.1
    • Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, peptidyl-cysteine S-nitrosylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: cyclophilin 5 (TAIR:AT2G29960.2); Has 4084 Blast hits to 4084 proteins in 692 species: Archae - 13; Bacteria - 526; Metazoa - 1613; Fungi - 701; Plants - 735; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink).
    NP_198360.3
    • Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, peptidyl-cysteine S-nitrosylation; LOCATED IN: thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G34960.1); Has 4654 Blast hits to 4654 proteins in 798 species: Archae - 9; Bacteria - 741; Metazoa - 1669; Fungi - 839; Plants - 784; Viruses - 0; Other Eukaryotes - 612 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      13359502..13361905 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122901.4 → NP_198360.3  Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQM4, O65220, Q8VXW1
      UniProtKB/TrEMBL
      A0A178UBX7, A0A1P8B9P2, A0A384LLJ4
      Conserved Domains (1) summary
      cl00197
      Location:82 → 242
      cyclophilin; cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug ...

    2. NM_001344094.1 → NP_001330066.1  Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQM4, O65220, Q8VXW1
      UniProtKB/TrEMBL
      A0A178UBX7, A0A1P8B9P2, A0A384LLJ4
      Conserved Domains (1) summary
      cl00197
      Location:82 → 242
      cyclophilin; cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug ...

    3. NM_001085167.1 → NP_001078636.1  Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078636.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQM4, O65220, Q8VXW1
      Conserved Domains (1) summary
      cd00317
      Location:74 → 197
      cyclophilin; cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the ...
    Nucleotide Protein
    Heading Accession and Version

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