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    Ran BP2/NZF zinc finger-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843053, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ran BP2/NZF zinc finger-like superfamily protein
    Primary source
    TAIR:AT1G67325
    Locus tag
    AT1G67325
    See related
    Araport:AT1G67325
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (25209394..25213253, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain Neighboring gene DNA primase, large subunit family Neighboring gene glucuronoxylan 4-O-methyltransferase-like protein (DUF579) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001198412.1
    NM_148637.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ran BP2/NZF zinc finger-like superfamily protein
    NP_001185341.1
    • Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15 (TAIR:AT1G50300.1).
    NP_683478.2
    • Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15 (TAIR:AT1G50300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25209394..25213253 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198412.1 → NP_001185341.1  Ran BP2/NZF zinc finger-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185341.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GZ43
      UniProtKB/TrEMBL
      A0A5S9WSY9
      Conserved Domains (3) summary
      smart00547
      Location:196 → 222
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:198 → 219
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:22 → 52
      zf-RanBP; Zn-finger in Ran binding protein and others

    2. NM_148637.3 → NP_683478.2  Ran BP2/NZF zinc finger-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_683478.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WSY9, F4HRV0
      Conserved Domains (3) summary
      smart00547
      Location:196 → 222
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:198 → 219
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:22 → 52
      zf-RanBP; Zn-finger in Ran binding protein and others
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GZ43.1

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