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    NOF1 U3 small nucleolar RNA-associated protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838345, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NOF1
    Official Full Name
    U3 small nucleolar RNA-associated protein
    Primary source
    TAIR:AT1G17690
    Locus tag
    AT1G17690
    See related
    Araport:AT1G17690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11A6.3; F11A6_3; nucleolar factor 1
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    Genomic context

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    See NOF1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    24
    Sequence:
    Chromosome: 1; NC_003070.9 (6082722..6088381, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Val Neighboring gene tetratricopeptide repeat (TPR)-containing protein Neighboring gene prenylated RAB acceptor 1.F1 Neighboring gene Pyridoxal phosphate phosphatase-related protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. NOF1 encodes an Arabidopsis protein involved in the control of rRNA expression. Harscoët E, et al. PLoS One, 2010 Sep 20. PMID 20877469, Free PMC Article
    2. Dual Role of a SAS10/C1D Family Protein in Ribosomal RNA Gene Expression and Processing Is Essential for Reproduction in Arabidopsis thaliana. Chen YC, et al. PLoS Genet, 2016 Oct. PMID 27792779, Free PMC Article
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101631.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables U3 snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo sac development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within rRNA transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    U3 small nucleolar RNA-associated protein
    NP_564032.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6082722..6088381 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101631.2 → NP_564032.1  U3 small nucleolar RNA-associated protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564032.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H1E7, Q93ZS0, Q9FZ64
      UniProtKB/TrEMBL
      A0A178W1V5, A0A5S9UWE5
      Conserved Domains (1) summary
      pfam06862
      Location:259 → 753
      UTP25; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H1E7.1

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