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    Sas10/Utp3/C1D family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837299, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Sas10/Utp3/C1D family
    Primary source
    TAIR:AT1G07840
    Locus tag
    AT1G07840
    See related
    Araport:AT1G07840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24B9.6; F24B9_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (2424045..2426728)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Histone superfamily protein Neighboring gene ribosomal protein L29 family protein Neighboring gene transferring glycosyl group transferase (DUF604) Neighboring gene Protein kinase superfamily protein Neighboring gene Serine/Threonine-kinase RLCKVII protein Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035912.1
    NM_100658.4
    NM_202056.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Sas10/Utp3/C1D family
    NP_001030989.1
    • Sas10/Utp3/C1D family; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_563798.1
    • Sas10/Utp3/C1D family; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 652 Blast hits to 650 proteins in 205 species: Archae - 2; Bacteria - 28; Metazoa - 259; Fungi - 134; Plants - 81; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).
    NP_973785.1
    • Sas10/Utp3/C1D family; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2424045..2426728
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100658.4 → NP_563798.1  Sas10/Utp3/C1D family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563798.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5J1, A0A5S9T5T1, Q93ZQ9
      Conserved Domains (1) summary
      pfam04000
      Location:24 → 103
      Sas10_Utp3; Sas10/Utp3/C1D family

    2. NM_001035912.1 → NP_001030989.1  Sas10/Utp3/C1D family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030989.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DFH9, Q9LQQ6
      Conserved Domains (1) summary
      pfam04000
      Location:24 → 103
      Sas10_Utp3; Sas10/Utp3/C1D family

    3. NM_202056.2 → NP_973785.1  Sas10/Utp3/C1D family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973785.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5J1, A0A5S9T5T1, Q93ZQ9
      Conserved Domains (1) summary
      pfam04000
      Location:24 → 103
      Sas10_Utp3; Sas10/Utp3/C1D family
    Nucleotide Protein
    Heading Accession and Version

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