TAFII21 TATA binding protein associated factor 21kDa subunit [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: TAFII21
Official Full Name: TATA binding protein associated factor 21kDa subunit
Primary source: TAIR:AT1G54140
Locus tag: AT1G54140
See related: Araport:AT1G54140
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F15I1.24; F15I1_24; TAF9; TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNI; TATA binding protein associated factor 21kDa subunit; TBP-ASSOCIATED FACTOR 9
Summary: putative TATA binding protein associated factor 21kDa
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Genomic context

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See TAFII21 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 3

Sequence:: Chromosome: 1; NC_003070.9 (20213899..20215265, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_104292.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein heterodimerization activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in DNA-templated transcription initiation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: TATA binding protein associated factor 21kDa subunit

NP_175816.1

TATA binding protein associated factor 21kDa subunit (TAFII21); FUNCTIONS IN: transcription initiation factor activity, DNA binding; INVOLVED IN: transcription initiation; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TAFII-31 (InterPro:IPR003162), Histone-fold (InterPro:IPR009072); Has 434 Blast hits to 434 proteins in 170 species: Archae - 0; Bacteria - 2; Metazoa - 206; Fungi - 130; Plants - 53; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

20213899..20215265 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_104292.4 → NP_175816.1 TATA binding protein associated factor 21kDa subunit [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_175816.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9SYH2

UniProtKB/TrEMBL

A0A178W640, A0A5S9WRP2

Conserved Domains (1) summary

pfam02291
Location:6 → 126

TFIID-31kDa; Transcription initiation factor IID, 31kD subunit