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    Ubiquitin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837749, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ubiquitin-like superfamily protein
    Primary source
    TAIR:AT1G11970
    Locus tag
    AT1G11970
    See related
    Araport:AT1G11970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12F1.16; F12F1_16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (4044370..4044669)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Transcription factor jumonji (jmjC) domain-containing protein Neighboring gene ERD (early-responsive to dehydration stress) family protein Neighboring gene O-fucosyltransferase family protein Neighboring gene ubiquitin-related protein 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ubiquitin-like superfamily protein
    NP_172661.1
    • Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin-related protein 3 (TAIR:AT1G11980.1); Has 285 Blast hits to 285 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 22; Plants - 105; Viruses - 1; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4044370..4044669
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101069.1 → NP_172661.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172661.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O65382
      Conserved Domains (1) summary
      cl28922
      Location:44 → 97
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
    Nucleotide Protein
    Heading Accession and Version

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