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    ECI1 delta(3), delta(2)-enoyl CoA isomerase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842864, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ECI1
    Official Full Name
    delta(3), delta(2)-enoyl CoA isomerase 1
    Primary source
    TAIR:AT1G65520
    Locus tag
    AT1G65520
    See related
    Araport:AT1G65520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''delta(3); ARABIDOPSIS THALIANA DELTA(3); ATECI1; delta(2)-enoyl CoA isomerase 1; DELTA(2)-ENOYL COA ISOMERASE 1; delta(2)-enoyl CoA isomerase 1''; delta(3); ECHIC; ENOYL-COA HYDRATASE/ISOMERASE C; F5I14.5; F5I14_5; PEC11
    Summary
    encodes a peroxisomal delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation
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    Genomic context

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    See ECI1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (24361032..24362054, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene LETM1-like protein Neighboring gene uncharacterized protein Neighboring gene Xanthine/uracil permease family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Peroxisomal Delta(3),Delta(2)-enoyl CoA isomerases and evolution of cytosolic paralogues in embryophytes. Goepfert S, et al. Plant J, 2008 Dec. PMID 18657232
    2. Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Reumann S, et al. Plant Cell, 2007 Oct. PMID 17951448, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_105226.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carnitine racemase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables delta(3)-delta(2)-enoyl-CoA isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables delta(3)-delta(2)-enoyl-CoA isomerase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid beta-oxidation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within fatty acid catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome HDA PubMed 

    General protein information

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    Preferred Names
    delta(3), delta(2)-enoyl CoA isomerase 1
    NP_176730.1
    • ''delta(3), delta(2)-enoyl CoA isomerase 1'' (ECI1); FUNCTIONS IN: carnitine racemase activity, catalytic activity, dodecenoyl-CoA delta-isomerase activity; INVOLVED IN: fatty acid catabolic process, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: 3-hydroxyacyl-CoA dehydratase 1 (TAIR:AT4G14440.1); Has 6860 Blast hits to 6860 proteins in 1261 species: Archae - 142; Bacteria - 4521; Metazoa - 587; Fungi - 178; Plants - 198; Viruses - 0; Other Eukaryotes - 1234 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24361032..24362054 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105226.4 → NP_176730.1  delta(3), delta(2)-enoyl CoA isomerase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176730.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04469, Q0WPJ6
      UniProtKB/TrEMBL
      A0A178WG79
      Conserved Domains (1) summary
      PLN02267
      Location:1 → 240
      PLN02267; enoyl-CoA hydratase/isomerase family protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04469.1

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