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    PGA4 polygalacturonase 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839391, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PGA4
    Official Full Name
    polygalacturonase 4
    Primary source
    TAIR:AT1G02790
    Locus tag
    AT1G02790
    See related
    Araport:AT1G02790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    POLYGALACTURONASE; polygalacturonase 4; T14P4.31
    Summary
    encodes a exopolygalacturonase.
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    Genomic context

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    See PGA4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (610363..612324, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Ribosomal protein L19e family protein Neighboring gene cellulase 2 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential expression of a polygalacturonase gene family in Arabidopsis thaliana. Torki M, et al. Mol Gen Genet, 1999 Jul. PMID 10485285
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_100158.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables galacturan 1,4-alpha-galacturonidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables polygalacturonase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    polygalacturonase 4
    NP_171778.1
    • polygalacturonase 4 (PGA4); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07830.1); Has 4155 Blast hits to 4140 proteins in 501 species: Archae - 6; Bacteria - 1251; Metazoa - 14; Fungi - 1275; Plants - 1482; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      610363..612324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100158.3 → NP_171778.1  polygalacturonase 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171778.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P49062
      UniProtKB/TrEMBL
      A0A178WH12, A0A5S9SAP9
      Conserved Domains (1) summary
      cl19188
      Location:21 → 421
      PL-6; Polysaccharide Lyase Family 6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P49062.1

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