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    PLIM2a GATA type zinc finger transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819188, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PLIM2a
    Official Full Name
    GATA type zinc finger transcription factor family protein
    Primary source
    TAIR:AT2G45800
    Locus tag
    AT2G45800
    See related
    Araport:AT2G45800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4I18.22
    Summary
    Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.
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    Genomic context

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    See PLIM2a in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (18857941..18859278, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene signal recognition particle receptor protein, chloroplast (FTSY) Neighboring gene ncRNA Neighboring gene phosphomannomutase Neighboring gene ncRNA Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene Remorin family protein Neighboring gene downstream target of AGL15 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Demonstration in vivo of the role of Arabidopsis PLIM2 actin-binding proteins during pollination. Sudo K, et al. Genes Genet Syst, 2013. PMID 24694391
    2. Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns and modes of regulation. Papuga J, et al. Plant Cell, 2010 Sep. PMID 20817848, Free PMC Article
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036468.2
    NM_130143.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables actin filament binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within actin filament bundle assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with actin cytoskeleton IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GATA type zinc finger transcription factor family protein
    NP_001031545.1
    • GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT3G61230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_182104.1
    • GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT3G61230.1); Has 6011 Blast hits to 3830 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 5054; Fungi - 46; Plants - 459; Viruses - 0; Other Eukaryotes - 452 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18857941..18859278 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130143.4 → NP_182104.1  GATA type zinc finger transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182104.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IH47, O80839
      UniProtKB/TrEMBL
      A0A178VQD3, A0A5S9X7D7, A0A654F3J2
      Conserved Domains (2) summary
      cd09440
      Location:6 → 68
      LIM1_SF3; The first Lim domain of pollen specific protein SF3
      cl02475
      Location:106 → 166
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    2. NM_001036468.2 → NP_001031545.1  GATA type zinc finger transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031545.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F3J2
      Conserved Domains (1) summary
      cl02475
      Location:75 → 135
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80839.1

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