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    Ubiquitin-associated/translation elongation factor EF1B protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817233, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ubiquitin-associated/translation elongation factor EF1B protein
    Primary source
    TAIR:AT2G26920
    Locus tag
    AT2G26920
    See related
    Araport:AT2G26920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12C20.4; F12C20_4
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (11488988..11491751)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Sodium Bile acid symporter family Neighboring gene pleiotropic drug resistance 4 Neighboring gene 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase Neighboring gene C2H2-type zinc finger family protein Neighboring gene myb domain protein 104

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_128249.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ubiquitin-associated/translation elongation factor EF1B protein
    NP_180260.1
    • Ubiquitin-associated/translation elongation factor EF1B protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Ubiquitin-associated/translation elongation factor EF1B protein (TAIR:AT5G12120.1); Has 396 Blast hits to 387 proteins in 96 species: Archae - 0; Bacteria - 14; Metazoa - 132; Fungi - 65; Plants - 58; Viruses - 1; Other Eukaryotes - 126 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11488988..11491751
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128249.5 → NP_180260.1  Ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180260.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VX05, A0A5S9X1J2, A0A7G2ECQ2, O81015
      Conserved Domains (1) summary
      cl21463
      Location:158 → 194
      UBA_like_SF; UBA domain-like superfamily
    Nucleotide Protein
    Heading Accession and Version

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