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    Peptide chain release factor 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819316, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Peptide chain release factor 1
    Primary source
    TAIR:AT2G47020
    Locus tag
    AT2G47020
    See related
    Araport:AT2G47020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14M4.15
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    11
    Sequence:
    Chromosome: 2; NC_003071.7 (19319685..19322507, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene calcium/calcium/calmodulin-dependent Serine/Threonine-kinase Neighboring gene ncRNA Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Substrates related to chromatin and to RNA-dependent processes are modified by Arabidopsis SUMO isoforms that differ in a conserved residue with influence on desumoylation. Budhiraja R, et al. Plant Physiol, 2009 Mar. PMID 19151129, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001337240.1
    NM_001337241.1
    NM_001337242.1
    NM_001337243.1
    NM_130270.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables translation release factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables translation release factor activity, codon specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translational termination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Peptide chain release factor 1
    NP_001318439.1
    • Peptide chain release factor 1; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 1 (TAIR:AT3G62910.1); Has 16260 Blast hits to 16258 proteins in 2815 species: Archae - 0; Bacteria - 10372; Metazoa - 189; Fungi - 181; Plants - 204; Viruses - 13; Other Eukaryotes - 5301 (source: NCBI BLink).
    NP_182225.3
    • Peptide chain release factor 1; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: mitochondrion, cytoplasm; CONTAINS InterPro DOMAIN/s: Peptide chain release factor 1 (InterPro:IPR004373), Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 1 (TAIR:AT3G62910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19319685..19322507 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130270.4 → NP_182225.3  Peptide chain release factor 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182225.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A2RVR7, O80723, Q0WSC9, Q304B8
      UniProtKB/TrEMBL
      A0A5S9X7M6, A0A654F2N1
      Conserved Domains (1) summary
      PRK00591
      Location:54 → 410
      prfA; peptide chain release factor 1; Validated

    2. NM_001337241.1 → NP_001323992.1  Peptide chain release factor 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYS2, A0A5S9X7M6, A0A654F2N1

    3. NM_001337242.1 → NP_001323990.1  Peptide chain release factor 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYU8, A0A5S9X7M6, A0A654F2N1

    4. NM_001337243.1 → NP_001323991.1  Peptide chain release factor 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUR9, A0A1P8AYP4

    5. NM_001337240.1 → NP_001318439.1  Peptide chain release factor 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VWA3, F4IK58
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2RVR7.1

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