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    arginine-glutamic acid dipeptide repeat protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819394, updated on 18-Sep-2024

    Summary

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    Official Full Name
    arginine-glutamic acid dipeptide repeat protein
    Primary source
    TAIR:AT2G47820
    Locus tag
    AT2G47820
    See related
    Araport:AT2G47820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17A22.21
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (19587137..19590822)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene multidrug resistance-associated protein 4 Neighboring gene nuclear factor Y, subunit B5 Neighboring gene Cation efflux family protein Neighboring gene putative conserved protein ycf60 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis RPD3-like histone deacetylases form multiple complexes involved in stress response. Feng C, et al. J Genet Genomics, 2021 May 20. PMID 34144927
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001202844.2
    NM_130349.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    part_of histone deacetylase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    arginine-glutamic acid dipeptide repeat protein
    NP_001189773.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1).
    NP_182303.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1); Has 628 Blast hits to 543 proteins in 149 species: Archae - 0; Bacteria - 106; Metazoa - 145; Fungi - 69; Plants - 97; Viruses - 10; Other Eukaryotes - 201 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19587137..19590822
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202844.2 → NP_001189773.1  arginine-glutamic acid dipeptide repeat protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189773.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLC6, Q8GZA1

    2. NM_130349.3 → NP_182303.2  arginine-glutamic acid dipeptide repeat protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182303.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLC6, Q8GZA1
    Nucleotide Protein
    Heading Accession and Version

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