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    trichome birefringence-like protein (DUF828) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817667, updated on 18-Sep-2024

    Summary

    Official Full Name
    trichome birefringence-like protein (DUF828)
    Primary source
    TAIR:AT2G31110
    Locus tag
    AT2G31110
    See related
    Araport:AT2G31110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16B12.8; T16B12_8; TBL40; TRICHOME BIREFRINGENCE-LIKE 40
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (13258329..13262256, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CLAVATA3/ESR-RELATED 6 Neighboring gene uncharacterized protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene uncharacterized protein Neighboring gene Peptidase S24/S26A/S26B/S26C family protein Neighboring gene uncharacterized protein

    General gene information

    NM_001084516.2
    NM_001336316.1
    NM_128667.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    trichome birefringence-like protein (DUF828)
    NP_001077985.1
    • INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 39 (TAIR:AT2G42570.1); Has 1336 Blast hits to 1317 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1333; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_180669.2
    • TRICHOME BIREFRINGENCE-LIKE 40 (TBL40); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 39 (TAIR:AT2G42570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13258329..13262256 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084516.2NP_001077985.1  trichome birefringence-like protein (DUF828) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077985.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IPX4, F4IPX5, O82273, Q67XC4, Q84W32, Q8LAX5
      UniProtKB/TrEMBL
      A0A178VPV0, A0A5S9X2T3, A0A7G2EGI4
      Conserved Domains (1) summary
      PLN02629
      Location:6362
      PLN02629; powdery mildew resistance 5
    2. NM_001336316.1NP_001324555.1  trichome birefringence-like protein (DUF828) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0F5
    3. NM_128667.2NP_180669.2  trichome birefringence-like protein (DUF828) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180669.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67XC4
      Conserved Domains (1) summary
      pfam13839
      Location:8214
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p