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    POP4 ribonuclease P family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818920, updated on 18-Sep-2024

    Summary

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    Official Symbol
    POP4
    Official Full Name
    ribonuclease P family protein
    Primary source
    TAIR:AT2G43190
    Locus tag
    AT2G43190
    See related
    Araport:AT2G43190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14B2.13; similar to yeast POP4
    Summary
    Encodes a protein involved in rRNA but not tRNA maturation.
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    Genomic context

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    See POP4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (17955953..17958226)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ENTH/VHS family protein Neighboring gene ncRNA Neighboring gene Phosphoenolpyruvate carboxylase family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Ubiquitin-like superfamily protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Protein kinase superfamily protein Neighboring gene phosphoribosylformylglycinamidine synthase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PRORP proteins support RNase P activity in both organelles and the nucleus in Arabidopsis. Gutmann B, et al. Genes Dev, 2012 May 15. PMID 22549728, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001202810.1
    NM_001337019.1
    NM_180058.2
    NM_201949.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ribonuclease P RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ribonuclease P activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in tRNA 5'-leader removal IEA
    Inferred from Electronic Annotation
    more info
    		  
    NOT involved_in tRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of ribonuclease MRP complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonuclease P complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribonuclease P family protein
    NP_001189739.1
    • ribonuclease P family protein; FUNCTIONS IN: ribonuclease activity, ribonuclease P activity, RNA binding; INVOLVED IN: tRNA processing, mRNA cleavage, rRNA processing; LOCATED IN: ribonuclease P complex, nucleolar ribonuclease P complex, ribonuclease MRP complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease P/MRP, subunit p29, eukaryotic/archaeal (InterPro:IPR002730), Ribonuclease P/MRP, p29 subunit, eukaryotic (InterPro:IPR016848).
    NP_565993.1
    • ribonuclease P family protein; FUNCTIONS IN: ribonuclease activity, ribonuclease P activity, RNA binding; INVOLVED IN: tRNA processing, mRNA cleavage, rRNA processing; LOCATED IN: ribonuclease P complex, nucleolar ribonuclease P complex, ribonuclease MRP complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease P/MRP, subunit p29, eukaryotic/archaeal (InterPro:IPR002730), Ribonuclease P/MRP, p29 subunit, eukaryotic (InterPro:IPR016848); Has 293 Blast hits to 293 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 100; Plants - 34; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    NP_850389.1
    • ribonuclease P family protein; FUNCTIONS IN: ribonuclease activity, ribonuclease P activity, RNA binding; INVOLVED IN: tRNA processing, mRNA cleavage, rRNA processing; LOCATED IN: ribonuclease P complex, nucleolar ribonuclease P complex, ribonuclease MRP complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease P/MRP, subunit p29, eukaryotic/archaeal (InterPro:IPR002730), Ribonuclease P/MRP, p29 subunit, eukaryotic (InterPro:IPR016848); Has 287 Blast hits to 287 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 100; Plants - 32; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
    NP_973678.1
    • ribonuclease P family protein; FUNCTIONS IN: ribonuclease activity, ribonuclease P activity, RNA binding; INVOLVED IN: tRNA processing, mRNA cleavage, rRNA processing; LOCATED IN: ribonuclease P complex, nucleolar ribonuclease P complex, ribonuclease MRP complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease P/MRP, subunit p29, eukaryotic/archaeal (InterPro:IPR002730), Ribonuclease P/MRP, p29 subunit, eukaryotic (InterPro:IPR016848); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17955953..17958226
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129881.3 → NP_565993.1  ribonuclease P family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565993.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178W358, F4IQ79, Q9ZW76
      UniProtKB/TrEMBL
      A0A384KZC1, A0A7G2EJL8
      Conserved Domains (1) summary
      pfam01868
      Location:216 → 290
      UPF0086; Domain of unknown function UPF0086

    2. NM_201949.2 → NP_973678.1  ribonuclease P family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973678.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1I3, A0A7G2EK25
      Conserved Domains (1) summary
      pfam01868
      Location:215 → 289
      UPF0086; Domain of unknown function UPF0086

    3. NM_001337019.1 → NP_001324792.1  ribonuclease P family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178W358, F4IQ79, Q9ZW76
      UniProtKB/TrEMBL
      A0A384KZC1, A0A7G2EJL8
      Conserved Domains (1) summary
      pfam01868
      Location:216 → 290
      UPF0086; Domain of unknown function UPF0086

    4. NM_001202810.1 → NP_001189739.1  ribonuclease P family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189739.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EJL8, F4IQ78
      Conserved Domains (1) summary
      pfam01868
      Location:181 → 255
      UPF0086; Domain of unknown function UPF0086

    5. NM_180058.2 → NP_850389.1  ribonuclease P family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850389.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1I3, A0A7G2EK25
      Conserved Domains (1) summary
      pfam01868
      Location:215 → 289
      UPF0086; Domain of unknown function UPF0086
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZW76.2

    Gene LinkOut

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