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    FIP1 FRIGIDA interacting protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815154, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FIP1
    Official Full Name
    FRIGIDA interacting protein 1
    Primary source
    TAIR:AT2G06005
    Locus tag
    AT2G06005
    See related
    Araport:AT2G06005
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FRIGIDA interacting protein 1
    Summary
    Encodes one of the FRI interacting proteins: FRIGIDA INTERACTING PROTEIN 1 (FIP1)/At2g06005, FIP2/ At4g17060. FRI (At4G00650) is a major determinant of natural variation in Arabidopsis flowering time.
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    Genomic context

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    See FIP1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Sequence:
    Chromosome: 2; NC_003071.7 (2332317..2336257)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ncRNA Neighboring gene OBP3-responsive protein 4 (ORG4) Neighboring gene Homeodomain-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FRIGIDA delays flowering in Arabidopsis via a cotranscriptional mechanism involving direct interaction with the nuclear cap-binding complex. Geraldo N, et al. Plant Physiol, 2009 Jul. PMID 19429606, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001335289.1
    NM_001335290.1
    NM_001335291.1
    NM_001335292.1
    NM_001335293.1
    NM_126614.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FRIGIDA interacting protein 1
    NP_001318204.1
    • FRIGIDA interacting protein 1 (FIP1); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20580.2); Has 283 Blast hits to 279 proteins in 95 species: Archae - 0; Bacteria - 30; Metazoa - 98; Fungi - 20; Plants - 56; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
    NP_565332.1
    • FRIGIDA interacting protein 1 (FIP1); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20580.2); Has 339 Blast hits to 333 proteins in 113 species: Archae - 0; Bacteria - 43; Metazoa - 135; Fungi - 18; Plants - 56; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      2332317..2336257
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335289.1 → NP_001318204.1  FRIGIDA interacting protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WXG2, F4IIB8

    2. NM_001335290.1 → NP_001324184.1  FRIGIDA interacting protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZA6, Q8LPS3

    3. NM_126614.3 → NP_565332.1  FRIGIDA interacting protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565332.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8S8K9
      UniProtKB/TrEMBL
      A0A178VYY3, A0A5S9WXG2, A0A654EX73
      Conserved Domains (2) summary
      COG1196
      Location:202 → 344
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam14802
      Location:71 → 230
      TMEM192; TMEM192 family

    4. NM_001335291.1 → NP_001324181.1  FRIGIDA interacting protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZA8
      Conserved Domains (1) summary
      pfam14802
      Location:71 → 230
      TMEM192; TMEM192 family

    5. NM_001335292.1 → NP_001324182.1  FRIGIDA interacting protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZA1

    6. NM_001335293.1 → NP_001324183.1  FRIGIDA interacting protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZC6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S8K9.1

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