U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    DNA-binding storekeeper protein-related transcriptional regulator [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827164, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    DNA-binding storekeeper protein-related transcriptional regulator
    Primary source
    TAIR:AT4G00270
    Locus tag
    AT4G00270
    See related
    Araport:AT4G00270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A_IG005I10.11; A_IG005I10_11; F5I10.11; F5I10_11
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (117085..118643, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene DNA-binding storekeeper protein-related transcriptional regulator Neighboring gene Transcriptional factor B3 family protein Neighboring gene ER protein carbohydrate-binding protein Neighboring gene Mechanosensitive ion channel protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. GeBP and GeBP-like proteins are noncanonical leucine-zipper transcription factors that regulate cytokinin response in Arabidopsis. Chevalier F, et al. Plant Physiol, 2008 Mar. PMID 18162594, Free PMC Article
    2. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Nietzsche M, et al. Plant Physiol, 2018 Feb. PMID 29192025, Free PMC Article
    3. DUF581 is plant specific FCS-like zinc finger involved in protein-protein interaction. K MJ, et al. PLoS One, 2014. PMID 24901469, Free PMC Article
    4. GeBP, the first member of a new gene family in Arabidopsis, encodes a nuclear protein with DNA-binding activity and is regulated by KNAT1. Curaba J, et al. Plant J, 2003 Jan. PMID 12535344
    5. The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants. Nietzsche M, et al. Front Plant Sci, 2014. PMID 24600465, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_116248.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables cis-regulatory region sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to oomycetes IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA-binding storekeeper protein-related transcriptional regulator
    NP_567163.1
    • DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT2G25650.1); Has 282 Blast hits to 277 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 255; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      117085..118643 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116248.4 → NP_567163.1  DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567163.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23075, Q9ASZ1
      UniProtKB/TrEMBL
      A0A178UT32, A0A7G2EXB7
      Conserved Domains (1) summary
      pfam04504
      Location:68 → 157
      DUF573; Protein of unknown function, DUF573
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ASZ1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.