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    F-box/LRR protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815159, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/LRR protein
    Primary source
    TAIR:AT2G06040
    Locus tag
    AT2G06040
    See related
    Araport:AT2G06040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5K7.20; F5K7_20
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (2352145..2355597, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene OBP3-responsive protein 4 (ORG4) Neighboring gene Homeodomain-like superfamily protein Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene pseudo Neighboring gene oxophytodienoate-reductase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RAD7 homologues contribute to Arabidopsis UV tolerance. Lahari T, et al. Plant Sci, 2018 Dec. PMID 30466592
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_126618.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within nucleotide-excision repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to UV-C IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box/LRR protein
    NP_178661.2
    • CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      2352145..2355597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126618.5 → NP_178661.2  F-box/LRR protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178661.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IIC2, Q0WNX6, Q682R0
      Conserved Domains (2) summary
      cd09293
      Location:446 → 632
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:538 → 563
      LRR_AMN1; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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