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    SDG37 SET domain group 37 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816300, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SDG37
    Official Full Name
    SET domain group 37
    Primary source
    TAIR:AT2G17900
    Locus tag
    AT2G17900
    See related
    Araport:AT2G17900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ASH1-related 1; ASHR1; SET domain group 37; SET DOMAIN GROUP 37; T13L16.8; T13L16_8
    Summary
    Homology Subgroup S-ET - Protein containing an interrupted SET domain.
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    Genomic context

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    See SDG37 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Sequence:
    Chromosome: 2; NC_003071.7 (7773220..7776825, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene calcium-dependent protein kinase 16 Neighboring gene Ta11-like non-LTR retrotransposon Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_179638.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SET domain group 37
    NP_849969.2
    • SET domain group 37 (SDG37); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: histone-lysine N-methyltransferase ATXR2 (TAIR:AT3G21820.1); Has 2797 Blast hits to 2717 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 1313; Fungi - 588; Plants - 382; Viruses - 7; Other Eukaryotes - 507 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7773220..7776825 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179638.2 → NP_849969.2  SET domain group 37 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZE22, A0A654EVC7
    Nucleotide Protein
    Heading Accession and Version

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