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    Calcium-binding endonuclease/exonuclease/phosphatase family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839381, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Calcium-binding endonuclease/exonuclease/phosphatase family
    Primary source
    TAIR:AT1G02270
    Locus tag
    AT1G02270
    See related
    Araport:AT1G02270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6A9.35
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (443118..446296, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NAC domain containing protein 5 Neighboring gene Divalent ion symporter Neighboring gene miscRNA Neighboring gene translocon at the outer envelope membrane of chloroplasts 33

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001331330.1
    NM_100107.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    Calcium-binding endonuclease/exonuclease/phosphatase family
    NP_563646.1
    • Calcium-binding endonuclease/exonuclease/phosphatase family; FUNCTIONS IN: catalytic activity, calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT5G54130.2); Has 514 Blast hits to 514 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 59; Plants - 214; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      443118..446296 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100107.5 → NP_563646.1  Calcium-binding endonuclease/exonuclease/phosphatase family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563646.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81916, Q940T7
      UniProtKB/TrEMBL
      A0A178VZU8, A0A5S9S714, A0A654E7H5
      Conserved Domains (2) summary
      pfam13499
      Location:357 → 412
      EF-hand_7; EF-hand domain pair
      cl00490
      Location:73 → 280
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    2. NM_001331330.1 → NP_001322300.1  Calcium-binding endonuclease/exonuclease/phosphatase family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ATK3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81916.2

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