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    oxidoreductase, 2OG-Fe(II) oxygenase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837723, updated on 18-Sep-2024

    Summary

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    Official Full Name
    oxidoreductase, 2OG-Fe(II) oxygenase family protein
    Primary source
    TAIR:AT1G11780
    Locus tag
    AT1G11780
    See related
    Araport:AT1G11780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25C20.6; F25C20_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (3976839..3979237, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit-like protein Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene FAD-binding Berberine family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene arogenate dehydratase 1 Neighboring gene endonuclease/exonuclease/phosphatase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of AtALKBH1A and AtALKBH1D as DNA N(6)-adenine demethylases in Arabidopsis thaliana. Li D, et al. Plant Sci, 2024 May. PMID 38432357
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101050.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA demethylase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within seed germination IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    oxidoreductase, 2OG-Fe(II) oxygenase family protein
    NP_172643.1
    • oxidoreductase, 2OG-Fe(II) oxygenase family protein; BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT5G01780.2); Has 1304 Blast hits to 1304 proteins in 617 species: Archae - 0; Bacteria - 928; Metazoa - 100; Fungi - 94; Plants - 80; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3976839..3979237 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101050.4 → NP_172643.1  oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172643.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A2RVV6, Q9SA98
      UniProtKB/TrEMBL
      A0A178WHV6, A0A5S9TYZ0
      Conserved Domains (1) summary
      pfam13532
      Location:86 → 342
      2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SA98.2

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