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    indigoidine synthase A family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841473, updated on 18-Sep-2024

    Summary

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    Official Full Name
    indigoidine synthase A family protein
    Primary source
    TAIR:AT1G50510
    Locus tag
    AT1G50510
    See related
    Araport:AT1G50510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11F12.14
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (18716112..18719336)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene 10-formyltetrahydrofolate synthetase Neighboring gene ubiquitin-conjugating enzyme 20 Neighboring gene Membrane trafficking VPS53 family protein Neighboring gene cytochrome P450, family 705, subfamily A, polypeptide 27 Neighboring gene uncharacterized protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Kinase and a Glycosylase Catabolize Pseudouridine in the Peroxisome to Prevent Toxic Pseudouridine Monophosphate Accumulation. Chen M, et al. Plant Cell, 2020 Mar. PMID 31907295, Free PMC Article
    2. In-depth proteome analysis of Arabidopsis leaf peroxisomes combined with in vivo subcellular targeting verification indicates novel metabolic and regulatory functions of peroxisomes. Reumann S, et al. Plant Physiol, 2009 May. PMID 19329564, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_103934.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA glycosylase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables pseudouridylate synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables pseudouridylate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    indigoidine synthase A family protein
    NP_564574.2
    • indigoidine synthase A family protein; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome, plasma membrane; CONTAINS InterPro DOMAIN/s: Indigoidine synthase A like protein (InterPro:IPR007342); Has 1680 Blast hits to 1674 proteins in 598 species: Archae - 0; Bacteria - 980; Metazoa - 68; Fungi - 108; Plants - 51; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18716112..18719336
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103934.5 → NP_564574.2  indigoidine synthase A family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564574.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84K35, Q9LPS4
      UniProtKB/TrEMBL
      A0A178WKH3, A0A654EMB6
      Conserved Domains (1) summary
      pfam04227
      Location:36 → 325
      Indigoidine_A; Indigoidine synthase A like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84K35.1

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