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    BXL2 beta-xylosidase 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837940, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BXL2
    Official Full Name
    beta-xylosidase 2
    Primary source
    TAIR:AT1G02640
    Locus tag
    AT1G02640
    See related
    Araport:AT1G02640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATBXL2; beta-xylosidase 2; BETA-XYLOSIDASE 2; T14P4.8; T14P4_8
    Summary
    encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.
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    Genomic context

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    See BXL2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (564018..567771)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Nucleoside transporter family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_100144.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables xylan 1,4-beta-xylosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in xylan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    beta-xylosidase 2
    NP_563659.1
    • beta-xylosidase 2 (BXL2); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 1 (TAIR:AT5G49360.1); Has 9578 Blast hits to 8300 proteins in 1224 species: Archae - 65; Bacteria - 5802; Metazoa - 17; Fungi - 1614; Plants - 527; Viruses - 0; Other Eukaryotes - 1553 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      564018..567771
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100144.3 → NP_563659.1  beta-xylosidase 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563659.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94KD8, Q9FWY2
      UniProtKB/TrEMBL
      A0A5S9S9P5, A0A654E7L3
      Conserved Domains (1) summary
      PLN03080
      Location:4 → 760
      PLN03080; Probable beta-xylosidase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94KD8.1

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