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    flowering time control protein-related / FCA gamma-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819344, updated on 18-Sep-2024

    Summary

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    Official Full Name
    flowering time control protein-related / FCA gamma-like protein
    Primary source
    TAIR:AT2G47310
    Locus tag
    AT2G47310
    See related
    Araport:AT2G47310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8I13.15
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    14
    Sequence:
    Chromosome: 2; NC_003071.7 (19423589..19427277)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ribonuclease Ps Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The P-body component DECAPPING5 and the floral repressor SISTER OF FCA regulate FLOWERING LOCUS C transcription in Arabidopsis. Wang W, et al. Plant Cell, 2023 Sep 1. PMID 37220754, Free PMC Article
    2. Molecular variation in a functionally divergent homolog of FCA regulates flowering time in Arabidopsis thaliana. Wang Y, et al. Nat Commun, 2020 Nov 17. PMID 33203912, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The P-body component DECAPPING5 and the floral repressor SISTER OF FCA regulate FLOWERING LOCUS C transcription in Arabidopsis.
      Title: The P-body component DECAPPING5 and the floral repressor SISTER OF FCA regulate FLOWERING LOCUS C transcription in Arabidopsis.
    2. Molecular variation in a functionally divergent homolog of FCA regulates flowering time in Arabidopsis thaliana.
      Title: Molecular variation in a functionally divergent homolog of FCA regulates flowering time in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_180141.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    flowering time control protein-related / FCA gamma-like protein
    NP_850472.1
    • flowering time control protein-related / FCA gamma-related; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), WW/Rsp5/WWP (InterPro:IPR001202), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding;abscisic acid binding (TAIR:AT4G16280.4); Has 13219 Blast hits to 10590 proteins in 472 species: Archae - 0; Bacteria - 420; Metazoa - 8082; Fungi - 1429; Plants - 2128; Viruses - 0; Other Eukaryotes - 1160 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19423589..19427277
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180141.2 → NP_850472.1  flowering time control protein-related / FCA gamma-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850472.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUJ6, A0A5S9X7R2, Q6AWW6
      Conserved Domains (2) summary
      pfam00397
      Location:406 → 432
      WW; WW domain
      cl17169
      Location:111 → 190
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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