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    TY1 thioredoxin Y1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844010, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TY1
    Official Full Name
    thioredoxin Y1
    Primary source
    TAIR:AT1G76760
    Locus tag
    AT1G76760
    See related
    Araport:AT1G76760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATY1; F28O16.13; F28O16_13; thioredoxin Y1; THIOREDOXIN Y1; TRX-Y1
    Summary
    Encodes a y-type thioredoxin (Trx-y1) localized in chloroplast stroma.
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    Genomic context

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    See TY1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (28811685..28813164, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene egg cell-secreted-like protein (DUF1278) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A New Role for Plastid Thioredoxins in Seed Physiology in Relation to Hormone Regulation. Née G, et al. Int J Mol Sci, 2021 Sep 27. PMID 34638735, Free PMC Article
    2. Characterization of plastidial thioredoxins from Arabidopsis belonging to the new y-type. Collin V, et al. Plant Physiol, 2004 Dec. PMID 15531707, Free PMC Article
    3. A novel extended family of stromal thioredoxins. Cain P, et al. Plant Mol Biol, 2009 Jun. PMID 19259774
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A New Role for Plastid Thioredoxins in Seed Physiology in Relation to Hormone Regulation.
      Title: A New Role for Plastid Thioredoxins in Seed Physiology in Relation to Hormone Regulation.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_106326.8

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables enzyme activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein-disulfide reductase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of catalytic activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT located_in chloroplast thylakoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thioredoxin Y1
    NP_177802.2
    • thioredoxin Y1 (TY1); FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: glycerol ether metabolic process, cell redox homeostasis; LOCATED IN: chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y2 (TAIR:AT1G43560.1); Has 23491 Blast hits to 21806 proteins in 3039 species: Archae - 310; Bacteria - 12245; Metazoa - 3466; Fungi - 1226; Plants - 1976; Viruses - 18; Other Eukaryotes - 4250 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28811685..28813164 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106326.8 → NP_177802.2  thioredoxin Y1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177802.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NPF9, Q9SRD7
      UniProtKB/TrEMBL
      A0A178WE50, A0A5S9WUY7, A0A7G2E7S9
      Conserved Domains (1) summary
      cl00388
      Location:69 → 168
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NPF9.1

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