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    Ypt/Rab-GAP domain of gyp1p superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819980, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    Primary source
    TAIR:AT3G07890
    Locus tag
    AT3G07890
    See related
    Araport:AT3G07890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (2516271..2519545, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Immunoglobulin E-set superfamily protein Neighboring gene O-fucosyltransferase family protein Neighboring gene reactive oxygen species modulator-like protein Neighboring gene Translation initiation factor IF2/IF5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084654.2
    NM_001337749.1
    NM_001337750.1
    NM_111668.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    NP_001078123.1
    • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G37290.1); Has 5103 Blast hits to 5093 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 2600; Fungi - 1061; Plants - 534; Viruses - 0; Other Eukaryotes - 908 (source: NCBI BLink).
    NP_566323.1
    • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G37290.1); Has 5103 Blast hits to 5093 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 2600; Fungi - 1061; Plants - 534; Viruses - 0; Other Eukaryotes - 908 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2516271..2519545 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337748.1 → NP_001327184.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VG77, A0A384KDZ3, Q1H5B2, Q9SFC5
      Conserved Domains (1) summary
      smart00164
      Location:113 → 327
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

    2. NM_111668.4 → NP_566323.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566323.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VG77, A0A384KDZ3, Q1H5B2, Q9SFC5
      Conserved Domains (1) summary
      smart00164
      Location:113 → 327
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

    3. NM_001337749.1 → NP_001327182.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VG77, A0A384KDZ3, Q1H5B2, Q9SFC5
      Conserved Domains (1) summary
      smart00164
      Location:113 → 327
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

    4. NM_001084654.2 → NP_001078123.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078123.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VG77, A0A384KDZ3, Q1H5B2, Q9SFC5
      Conserved Domains (1) summary
      smart00164
      Location:113 → 327
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

    5. NM_001337750.1 → NP_001327183.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VG77, A0A384KDZ3, Q1H5B2, Q9SFC5
      Conserved Domains (1) summary
      smart00164
      Location:113 → 327
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    Nucleotide Protein
    Heading Accession and Version

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