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    RNA recognition motif XS domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821813, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA recognition motif XS domain protein
    Primary source
    TAIR:AT3G22430
    Locus tag
    AT3G22430
    See related
    Araport:AT3G22430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCB17.18
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (7953260..7958142)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene with no lysine (K) kinase 2 Neighboring gene F-box/associated interaction domain protein Neighboring gene imidazoleglycerol-phosphate dehydratase Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene FRIGIDA-like protein Neighboring gene Ribosomal L18p/L5e family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_113141.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulatory ncRNA-mediated gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA recognition motif XS domain protein
    NP_566707.2
    • CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7953260..7958142
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113141.4 → NP_566707.2  RNA recognition motif XS domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566707.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XF02, A0A7G2EKI9, F4J099
      Conserved Domains (1) summary
      cd12266
      Location:358 → 487
      RRM_like_XS; RNA recognition motif (RRM)-like XS domain found in plants
    Nucleotide Protein
    Heading Accession and Version

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