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    PLDP1 phospholipase D P1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820932, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PLDP1
    Official Full Name
    phospholipase D P1
    Primary source
    TAIR:AT3G16785
    Locus tag
    AT3G16785
    See related
    Araport:AT3G16785
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    PHOSPHOLIPASE D; phospholipase D P1; PHOSPHOLIPASE D P1; PHOSPHOLIPASE D ZETA 1; PHOSPHOLIPASE D ZETA1; PLD ZETA 1; PLDZ1; PLDZETA1
    Summary
    Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Does not appear to be involved in root hair patterning. Not induced upon Pi starvation.
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    Genomic context

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    See PLDP1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    18
    Sequence:
    Chromosome: 3; NC_003074.8 (5710889..5719192)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ethylene-responsive element binding protein Neighboring gene Ribosomal protein L19e family protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene pumilio 24

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis PLDζ1 and PLDζ2 localize to post-Golgi membrane compartments in a partially overlapping manner. Shimamura R, et al. Plant Mol Biol, 2022 Jan. PMID 34601701
    2. Phospholipases AtPLDζ1 and AtPLDζ2 function differently in hypoxia. Lindberg S, et al. Physiol Plant, 2018 Jan. PMID 28834646
    3. Phospholipases Dζ1 and Dζ2 have distinct roles in growth and antioxidant systems in Arabidopsis thaliana responding to salt stress. Ben Othman A, et al. Planta, 2017 Oct. PMID 28667438
    4. Phospholipase Dζ Enhances Diacylglycerol Flux into Triacylglycerol. Yang W, et al. Plant Physiol, 2017 May. PMID 28325849, Free PMC Article
    5. Quantitative profiling of Arabidopsis polar glycerolipids in response to phosphorus starvation. Roles of phospholipases D zeta1 and D zeta2 in phosphatidylcholine hydrolysis and digalactosyldiacylglycerol accumulation in phosphorus-starved plants. Li M, et al. Plant Physiol, 2006 Oct. PMID 16891548, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis PLDzeta1 and PLDzeta2 localize to post-Golgi membrane compartments in a partially overlapping manner.
      Title: Arabidopsis PLDζ1 and PLDζ2 localize to post-Golgi membrane compartments in a partially overlapping manner.
    2. The efficiency of photosystem II, estimated by measuring the ratio of chlorophyll fluorescence (F v/F m ratio), was strongly decreased in pldzeta1 under salt stress. In conclusion, PLDzeta2 plays a key role in determining Arabidopsis sensitivity to salt stress allowing ion transport and antioxidant responses to be finely regulated.
      Title: Phospholipases Dζ1 and Dζ2 have distinct roles in growth and antioxidant systems in Arabidopsis thaliana responding to salt stress.
    3. AtPLDzeta2 is involved in phosphatidic acids production by a calcium signaling pathway, while AtPLDzeta1 is more important in reactive oxygen species signaling.
      Title: Phospholipases AtPLDζ1 and AtPLDζ2 function differently in hypoxia.
    4. PLDzeta1 plays a role in regulating root development in response to nutrient limitation.
      Title: Double knockouts of phospholipases Dzeta1 and Dzeta2 in Arabidopsis affect root elongation during phosphate-limited growth but do not affect root hair patterning.
    5. Hydrolysis of phosphatidylcholine by PLD zetas during phosphorus starvation contributes to the supply of inorganic phosphorus in A. thaliana.
      Title: Quantitative profiling of Arabidopsis polar glycerolipids in response to phosphorus starvation. Roles of phospholipases D zeta1 and D zeta2 in phosphatidylcholine hydrolysis and digalactosyldiacylglycerol accumulation in phosphorus-starved plants.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_001338257.1
    NM_001338258.1
    NM_001338259.1
    NM_112553.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables N-acylphosphatidylethanolamine-specific phospholipase D activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phospholipase D activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables phospholipase D activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phospholipase D activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables phospholipase D activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    NOT involved_in cellular response to phosphate starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within lipid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in phosphatidic acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within root development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    phospholipase D P1
    NP_188302.2
    • phospholipase D P1 (PLDP1); CONTAINS InterPro DOMAIN/s: Phospholipase D, eukaryota (InterPro:IPR016555), Pleckstrin homology-type (InterPro:IPR011993), Phospholipase D (InterPro:IPR015679), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phospholipase D P2 (TAIR:AT3G05630.1); Has 3214 Blast hits to 1855 proteins in 548 species: Archae - 2; Bacteria - 1049; Metazoa - 509; Fungi - 676; Plants - 827; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5710889..5719192
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338255.1 → NP_001326711.1  phospholipase D P1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VA82, A0A1I9LQ42
      Conserved Domains (1) summary
      PLN02866
      Location:38 → 993
      PLN02866; phospholipase D

    2. NM_001338256.1 → NP_001326710.1  phospholipase D P1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VA82, A0A1I9LQ42
      Conserved Domains (1) summary
      PLN02866
      Location:38 → 993
      PLN02866; phospholipase D

    3. NM_112553.4 → NP_188302.2  phospholipase D P1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188302.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LRZ5
      UniProtKB/TrEMBL
      A0A7G2EQU8
      Conserved Domains (1) summary
      PLN02866
      Location:38 → 1096
      PLN02866; phospholipase D

    4. NM_001338257.1 → NP_001326709.1  phospholipase D P1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQ40, A0A7G2EQU8

    5. NM_001338258.1 → NP_001326708.1  phospholipase D P1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VA82, A0A1I9LQ38

    6. NM_001338259.1 → NP_001326707.1  phospholipase D P1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VA82, A0A1I9LQ38
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LRZ5.1

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