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    ELIP1 Chlorophyll A-B binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821855, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ELIP1
    Official Full Name
    Chlorophyll A-B binding family protein
    Primary source
    TAIR:AT3G22840
    Locus tag
    AT3G22840
    See related
    Araport:AT3G22840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EARLY LIGHT-INDUCABLE PROTEIN; ELIP
    Summary
    Encodes an early light-inducible protein.
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    Genomic context

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    See ELIP1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (8084405..8085669, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene allergen-like protein Neighboring gene heat shock transcription factor A6B Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene aluminum induced protein with YGL and LRDR motifs Neighboring gene eukaryotic translation initiation factor 3 subunit C2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A double SORLIP1 element is required for high light induction of ELIP genes in Arabidopsis thaliana. Rus Alvarez-Canterbury AM, et al. Plant Mol Biol, 2014 Feb. PMID 24072326, Free PMC Article
    2. The light stress-induced protein ELIP2 is a regulator of chlorophyll synthesis in Arabidopsis thaliana. Tzvetkova-Chevolleau T, et al. Plant J, 2007 Jun. PMID 17553115
    3. Differential expression and localization of early light-induced proteins in Arabidopsis. Heddad M, et al. Plant Physiol, 2006 Sep. PMID 16829586, Free PMC Article
    4. Suppression of both ELIP1 and ELIP2 in Arabidopsis does not affect tolerance to photoinhibition and photooxidative stress. Rossini S, et al. Plant Physiol, 2006 Aug. PMID 16778010, Free PMC Article
    5. Mutational and expression analysis of ELIP1 and ELIP2 in Arabidopsis thaliana. Casazza AP, et al. Plant Mol Biol, 2005 May. PMID 16028115

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. two G-box elements were found to redundantly contribute to HL induction conferred by the ELIP1 promoter
      Title: A double SORLIP1 element is required for high light induction of ELIP genes in Arabidopsis thaliana.
    2. Expression of the ELIP1 and ELIP2 genes in seeds is regulated by different phytochromes, as expression of ELIP1 is deregulated only under red light whereas ELIP2 is strongly reduced under far-red light.
      Title: Inactivation of the ELIP1 and ELIP2 genes affects Arabidopsis seed germination.
    3. Elip1 expression is differentially regulated in response to light or chilling stress with mechanisms active either at transcriptional and post-transcriptional level.
      Title: Mutational and expression analysis of ELIP1 and ELIP2 in Arabidopsis thaliana.
    4. Null mutations within the ELIP1 gene do not modify sensitivity to photoinhibition, photooxidation, or the ability to recover from light stress.
      Title: Suppression of both ELIP1 and ELIP2 in Arabidopsis does not affect tolerance to photoinhibition and photooxidative stress.
    5. we propose that the discrepancy between amounts of Elip transcripts and proteins in light stress-preadapted or senescent leaves is related to a presence of photoprotective anthocyanins or to lower chlorophyll availability, respectively
      Title: Differential expression and localization of early light-induced proteins in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_113183.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to UV-A IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to blue light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to far red light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to heat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to high light intensity IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to red light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in photoprotection IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of seed germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of chlorophyll biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to light stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Chlorophyll A-B binding family protein
    NP_188923.1
    • EARLY LIGHT-INDUCABLE PROTEIN (ELIP1); BEST Arabidopsis thaliana protein match is: Chlorophyll A-B binding family protein (TAIR:AT4G14690.1); Has 319 Blast hits to 319 proteins in 50 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8084405..8085669 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113183.4 → NP_188923.1  Chlorophyll A-B binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188923.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P93735
      UniProtKB/TrEMBL
      A0A178VCA8, A0A5S9XGB1
      Conserved Domains (1) summary
      pfam00504
      Location:96 → 188
      Chloroa_b-bind; Chlorophyll A-B binding protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P93735.1

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