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    Fatty acid desaturase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820830, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Fatty acid desaturase family protein
    Primary source
    TAIR:AT3G15870
    Locus tag
    AT3G15870
    See related
    Araport:AT3G15870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (5362888..5364544)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene fatty acid desaturase 5 Neighboring gene plant self-incompatibility protein S1 family protein Neighboring gene WUS-interacting protein 2 Neighboring gene Protein kinase superfamily protein Neighboring gene homoserine O-acetyltransferase Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of the Arabidopsis palmitoyl-monogalactosyldiacylglycerol delta7-desaturase gene FAD5, and effects of plastidial retargeting of Arabidopsis desaturases on the fad5 mutant phenotype. Heilmann I, et al. Plant Physiol, 2004 Dec. PMID 15579662, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Lack of an effect of mutation at this site on the activity of the plastidial palmitoyl-monogalactosyldiacylglycerol Delta7-desaturase FAD5.
      Title: Identification of the Arabidopsis palmitoyl-monogalactosyldiacylglycerol delta7-desaturase gene FAD5, and effects of plastidial retargeting of Arabidopsis desaturases on the fad5 mutant phenotype.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_112457.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in unsaturated fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Fatty acid desaturase family protein
    NP_188208.4
    • Fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase 5 (TAIR:AT3G15850.1); Has 3450 Blast hits to 3450 proteins in 826 species: Archae - 0; Bacteria - 1558; Metazoa - 797; Fungi - 221; Plants - 106; Viruses - 4; Other Eukaryotes - 764 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5362888..5364544
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112457.6 → NP_188208.4  Fatty acid desaturase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188208.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5IGR4, Q9LVZ3
      UniProtKB/TrEMBL
      A0A178V6D6, A0A5S9XCP9
      Conserved Domains (1) summary
      cl00615
      Location:78 → 361
      Membrane-FADS-like; The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVZ3.3

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