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    Tudor/PWWP/MBT superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820124, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tudor/PWWP/MBT superfamily protein
    Primary source
    TAIR:AT3G09670
    Locus tag
    AT3G09670
    See related
    Araport:AT3G09670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (2966201..2969058)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ascorbate peroxidase 2 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene minichromosome maintenance 8 Neighboring gene Ribosomal protein S12/S23 family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis PWWP domain proteins mediate H3K27 trimethylation on FLC and regulate flowering time. Zhou JX, et al. J Integr Plant Biol, 2018 May. PMID 29314758
    2. Arabidopsis thaliana MSI4/FVE associates with members of a novel family of plant specific PWWP/RRM domain proteins. Kenzior A, et al. Plant Mol Biol, 2015 Mar. PMID 25600937
    3. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084659.1
    NM_111801.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within epigenetic regulation of gene expression IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in epigenetic regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESC/E(Z) complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tudor/PWWP/MBT superfamily protein
    NP_001078128.1
    • Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT5G02950.1); Has 880 Blast hits to 796 proteins in 129 species: Archae - 0; Bacteria - 16; Metazoa - 486; Fungi - 43; Plants - 152; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).
    NP_187578.1
    • Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT5G02950.1); Has 880 Blast hits to 796 proteins in 129 species: Archae - 0; Bacteria - 16; Metazoa - 486; Fungi - 43; Plants - 152; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2966201..2969058
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111801.5 → NP_187578.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187578.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WMU6, Q9SF36
      UniProtKB/TrEMBL
      A0A178VA92, A0A5S9XAS9
      Conserved Domains (1) summary
      cd05162
      Location:197 → 283
      PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...

    2. NM_001084659.1 → NP_001078128.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078128.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WMU6, Q9SF36
      UniProtKB/TrEMBL
      A0A178VA92, A0A5S9XAS9
      Conserved Domains (1) summary
      cd05162
      Location:197 → 283
      PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SF36.1

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