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    RLP42 receptor like protein 42 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822093, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RLP42
    Official Full Name
    receptor like protein 42
    Primary source
    TAIR:AT3G25020
    Locus tag
    AT3G25020
    See related
    Araport:AT3G25020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtRLP42; RBPG1; receptor like protein 42; response to Botrytis polygalacturonases 1
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    Genomic context

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    See RLP42 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (9116684..9119804, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Synaptobrevin family protein Neighboring gene uncharacterized protein Neighboring gene RING/U-box superfamily protein Neighboring gene endoplasmic reticulum retention defective 2B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fungal endopolygalacturonases are recognized as microbe-associated molecular patterns by the arabidopsis receptor-like protein RESPONSIVENESS TO BOTRYTIS POLYGALACTURONASES1. Zhang L, et al. Plant Physiol, 2014 Jan. PMID 24259685, Free PMC Article
    2. The leucine-rich repeat as a protein recognition motif. Kobe B, et al. Curr Opin Struct Biol, 2001 Dec. PMID 11751054
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. the function of the RLP42 gene (RBPG1) as a receptor for fungal endopolygalacturonases from fungal pathogens
      Title: Fungal endopolygalacturonases are recognized as microbe-associated molecular patterns by the arabidopsis receptor-like protein RESPONSIVENESS TO BOTRYTIS POLYGALACTURONASES1.
    Submit: New GeneRIF Correction

    General gene information

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    NM_113406.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of defense response to oomycetes IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to molecule of fungal origin IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within signal transduction IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    receptor like protein 42
    NP_189138.1
    • receptor like protein 42 (RLP42); INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 40 (TAIR:AT3G24982.1); Has 101819 Blast hits to 28851 proteins in 1081 species: Archae - 42; Bacteria - 7146; Metazoa - 22681; Fungi - 1243; Plants - 63183; Viruses - 32; Other Eukaryotes - 7492 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9116684..9119804 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113406.2 → NP_189138.1  receptor like protein 42 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189138.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LJS0
      UniProtKB/TrEMBL
      W0JFJ4
      Conserved Domains (2) summary
      sd00033
      Location:172 → 197
      LRR_RI; leucine-rich repeat [structural motif]
      cl26793
      Location:113 → 810
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LJS0.1

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