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    Serinc-domain containing serine and sphingolipid biosynthesis protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822036, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Serinc-domain containing serine and sphingolipid biosynthesis protein
    Primary source
    TAIR:AT3G24460
    Locus tag
    AT3G24460
    See related
    Araport:AT3G24460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    13
    Sequence:
    Chromosome: 3; NC_003074.8 (8885818..8893203, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Fibronectin type III domain-containing protein Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene nuclear transport factor 2 family protein Neighboring gene Plant thionin family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001338683.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Serinc-domain containing serine and sphingolipid biosynthesis protein
    NP_001319630.1
    • Serinc-domain containing serine and sphingolipid biosynthesis protein; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT4G13345.1); Has 800 Blast hits to 764 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 443; Fungi - 147; Plants - 141; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8885818..8893203 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113353.8 → NP_189089.3  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189089.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XFL8, A0A654FB90, Q8VZI4
      Conserved Domains (1) summary
      pfam03348
      Location:39 → 402
      Serinc; Serine incorporator (Serinc)

    2. NM_001338683.1 → NP_001319630.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XFL8, A0A654FB90, Q8VZI4
      Conserved Domains (1) summary
      pfam03348
      Location:39 → 402
      Serinc; Serine incorporator (Serinc)
    Nucleotide Protein
    Heading Accession and Version

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