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    Yippee family putative zinc-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820293, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Yippee family putative zinc-binding protein
    Primary source
    TAIR:AT3G11230
    Locus tag
    AT3G11230
    See related
    Araport:AT3G11230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (3516563..3518477)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene alfin-like 2 Neighboring gene SGNH hydrolase-type esterase superfamily protein Neighboring gene Paxneb protein-like protein Neighboring gene arginine-tRNA protein transferase 2 Neighboring gene Ribosomal protein L10 family protein Neighboring gene WUSCHEL related homeobox 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084666.2
    NM_001337917.1
    NM_001337918.1
    NM_111958.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Yippee family putative zinc-binding protein
    NP_001078135.1
    • Yippee family putative zinc-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1); Has 983 Blast hits to 983 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 469; Fungi - 200; Plants - 237; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
    NP_566389.1
    • Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1); Has 985 Blast hits to 985 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 469; Fungi - 205; Plants - 238; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3516563..3518477
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084666.2 → NP_001078135.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078135.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XB42, A8MQA7
      Conserved Domains (1) summary
      cl13152
      Location:47 → 134
      RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains

    2. NM_001337917.1 → NP_001327326.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRZ0

    3. NM_001337918.1 → NP_001327325.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRY9

    4. NM_111958.5 → NP_566389.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566389.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L918, Q9C777
      UniProtKB/TrEMBL
      A0A178VKT2, A0A384KS80, A0A5S9XB42, Q0WT38
      Conserved Domains (1) summary
      cl13152
      Location:14 → 101
      RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C777.1

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